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Sample GSM948851 Query DataSets for GSM948851
Status Public on Apr 22, 2013
Title spleen_wt_replicate4
Sample type RNA
Source name spleen
Organism Mus musculus
Characteristics age: 12 weeks
mouse id: IC1017 +/-
genotype/variation: wildtype
strain: C57BL/6J-129ola-Fvb
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 4
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
Submission date Jun 15, 2012
Last update date Apr 22, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE38737 Genome-wide expression profiling analysis of a SMC6 mutant mouse model

Data table header descriptions
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1573.129 0
ILMN_2721178 443.1897 0
ILMN_3033922 269.2566 0
ILMN_3092673 1916.665 0
ILMN_2816356 28.75988 0.05639098
ILMN_2808939 546.2201 0
ILMN_2634564 207.788 0
ILMN_2737647 -0.1221299 0.5827067
ILMN_2734484 155.5046 0.001253133
ILMN_2952292 88.84515 0.002506266
ILMN_2699078 3.68351 0.3671679
ILMN_1213681 151.1986 0.001253133
ILMN_2735413 10.53779 0.2092732
ILMN_2735415 4.398795 0.3333333
ILMN_2891688 395.4521 0
ILMN_2637698 832.733 0
ILMN_2674228 336.2921 0
ILMN_2601546 18.24743 0.131579
ILMN_1230831 -0.5346862 0.6140351
ILMN_2848071 16.20392 0.1516291

Total number of rows: 25697

Table truncated, full table size 764 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Raw data are available on Series record

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