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Sample GSM948855 Query DataSets for GSM948855
Status Public on Apr 22, 2013
Title spleen_SMC6_replicate4
Sample type RNA
 
Source name spleen
Organism Mus musculus
Characteristics age: 12 weeks
mouse id: IC1018 -/-
genotype/variation: SMC6 mutant
strain: C57BL/6J-129ola-Fvb
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 4
SAMPLE 16
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
 
Submission date Jun 15, 2012
Last update date Apr 22, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
 
Platform ID GPL6885
Series (1)
GSE38737 Genome-wide expression profiling analysis of a SMC6 mutant mouse model

Data table header descriptions
ID_REF
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1733.101 0
ILMN_2721178 462.9236 0
ILMN_3033922 330.9491 0
ILMN_3092673 2009.965 0
ILMN_2816356 0.2027803 0.5977443
ILMN_2808939 523.0455 0
ILMN_2634564 302.3696 0
ILMN_2737647 11.33359 0.1867168
ILMN_2734484 114.4273 0.002506266
ILMN_2952292 114.2198 0.002506266
ILMN_2699078 3.688166 0.3546366
ILMN_1213681 132.5057 0
ILMN_2735413 19.0141 0.112782
ILMN_2735415 -1.268549 0.7230576
ILMN_2891688 369.4366 0
ILMN_2637698 1004.501 0
ILMN_2674228 334.7742 0
ILMN_2601546 25.19384 0.07518797
ILMN_1230831 16.70078 0.1278196
ILMN_2848071 9.197533 0.2092732

Total number of rows: 25697

Table truncated, full table size 754 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Raw data are available on Series record

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