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Sample GSM948856 Query DataSets for GSM948856
Status Public on Apr 22, 2013
Title brain_wt_replicate1
Sample type RNA
 
Source name brain
Organism Mus musculus
Characteristics age: 19 weeks
mouse id: 30174928
genotype/variation: wildtype
strain: C57BL/6J-129ola-Fvb
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 1
SAMPLE 17
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
 
Submission date Jun 15, 2012
Last update date Apr 22, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
 
Platform ID GPL6885
Series (1)
GSE38737 Genome-wide expression profiling analysis of a SMC6 mutant mouse model

Data table header descriptions
ID_REF
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1449.671 0
ILMN_2721178 381.3477 0
ILMN_3033922 465.282 0
ILMN_3092673 1796.157 0
ILMN_2816356 22.27861 0.02130326
ILMN_2808939 538.969 0
ILMN_2634564 205.0478 0
ILMN_2737647 -2.014978 0.764411
ILMN_2734484 228.114 0
ILMN_2952292 45.56604 0
ILMN_2699078 -0.5002158 0.5714286
ILMN_1213681 222.9973 0
ILMN_2735413 3.780169 0.2619048
ILMN_2735415 9.872312 0.1015038
ILMN_2891688 271.7445 0
ILMN_2637698 840.8568 0
ILMN_2674228 152.9605 0
ILMN_2601546 12.17566 0.0689223
ILMN_1230831 5.764488 0.2055138
ILMN_2848071 9.38205 0.1152882

Total number of rows: 25697

Table truncated, full table size 719 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Raw data are available on Series record

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