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Sample GSM948857 Query DataSets for GSM948857
Status Public on Apr 22, 2013
Title brain_wt_replicate2
Sample type RNA
 
Source name brain
Organism Mus musculus
Characteristics age: 19 weeks
mouse id: 30174925
genotype/variation: wildtype
strain: C57BL/6J-129ola-Fvb
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 2
SAMPLE 18
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
 
Submission date Jun 15, 2012
Last update date Apr 22, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
 
Platform ID GPL6885
Series (1)
GSE38737 Genome-wide expression profiling analysis of a SMC6 mutant mouse model

Data table header descriptions
ID_REF
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1384.058 0
ILMN_2721178 406.1779 0
ILMN_3033922 525.806 0
ILMN_3092673 1948.305 0
ILMN_2816356 9.413479 0.1190476
ILMN_2808939 510.2071 0
ILMN_2634564 214.9202 0
ILMN_2737647 4.034191 0.2468672
ILMN_2734484 186.2739 0
ILMN_2952292 43.44436 0.001253133
ILMN_2699078 -5.898849 0.981203
ILMN_1213681 216.6761 0
ILMN_2735413 3.451987 0.264411
ILMN_2735415 14.16791 0.0802005
ILMN_2891688 295.573 0
ILMN_2637698 776.827 0
ILMN_2674228 174.0108 0
ILMN_2601546 7.133175 0.1641604
ILMN_1230831 3.47331 0.264411
ILMN_2848071 24.09198 0.02380952

Total number of rows: 25697

Table truncated, full table size 730 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Raw data are available on Series record

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