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Sample GSM948858 Query DataSets for GSM948858
Status Public on Apr 22, 2013
Title brain_wt_replicate3
Sample type RNA
Source name brain
Organism Mus musculus
Characteristics age: 19 weeks
mouse id: 30174924
genotype/variation: wildtype
strain: C57BL/6J-129ola-Fvb
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 3
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
Submission date Jun 15, 2012
Last update date Apr 22, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE38737 Genome-wide expression profiling analysis of a SMC6 mutant mouse model

Data table header descriptions
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1450.982 0
ILMN_2721178 390.6282 0
ILMN_3033922 483.6584 0
ILMN_3092673 1943.098 0
ILMN_2816356 19.8188 0.02130326
ILMN_2808939 513.857 0
ILMN_2634564 232.0002 0
ILMN_2737647 1.595305 0.3997494
ILMN_2734484 198.9852 0
ILMN_2952292 39.6629 0.006265664
ILMN_2699078 -2.970052 0.8784461
ILMN_1213681 240.4979 0
ILMN_2735413 6.407946 0.1867168
ILMN_2735415 0.8261682 0.4411027
ILMN_2891688 273.3737 0
ILMN_2637698 742.0036 0
ILMN_2674228 173.8506 0
ILMN_2601546 7.370422 0.1616541
ILMN_1230831 33.85218 0.00877193
ILMN_2848071 28.20095 0.0112782

Total number of rows: 25697

Table truncated, full table size 726 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Raw data are available on Series record

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