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Sample GSM948859 Query DataSets for GSM948859
Status Public on Apr 22, 2013
Title brain_wt_replicate4
Sample type RNA
Source name brain
Organism Mus musculus
Characteristics age: 19 weeks
mouse id: 30174926
genotype/variation: wildtype
strain: C57BL/6J-129ola-Fvb
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 4
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
Submission date Jun 15, 2012
Last update date Apr 22, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE38737 Genome-wide expression profiling analysis of a SMC6 mutant mouse model

Data table header descriptions
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1418.82 0
ILMN_2721178 366.8947 0
ILMN_3033922 513.9083 0
ILMN_3092673 1976.65 0
ILMN_2816356 23.62563 0.02631579
ILMN_2808939 518.5932 0
ILMN_2634564 239.389 0
ILMN_2737647 8.697767 0.1616541
ILMN_2734484 201.9306 0
ILMN_2952292 54.23935 0
ILMN_2699078 1.336728 0.4172932
ILMN_1213681 228.5358 0
ILMN_2735413 -3.000309 0.8922306
ILMN_2735415 7.863024 0.1729323
ILMN_2891688 335.035 0
ILMN_2637698 757.322 0
ILMN_2674228 173.5793 0
ILMN_2601546 5.401954 0.216792
ILMN_1230831 6.658695 0.1917293
ILMN_2848071 28.32266 0.00877193

Total number of rows: 25697

Table truncated, full table size 728 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Raw data are available on Series record

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