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Sample GSM948860 Query DataSets for GSM948860
Status Public on Apr 22, 2013
Title brain_SMC6_replicate1
Sample type RNA
 
Source name brain
Organism Mus musculus
Characteristics age: 19 weeks
mouse id: 30174939
genotype/variation: SMC6 mutant
strain: C57BL/6J-129ola-Fvb
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 1
SAMPLE 21
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
 
Submission date Jun 15, 2012
Last update date Apr 22, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
 
Platform ID GPL6885
Series (1)
GSE38737 Genome-wide expression profiling analysis of a SMC6 mutant mouse model

Data table header descriptions
ID_REF
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1340.217 0
ILMN_2721178 413.2047 0
ILMN_3033922 570.0248 0
ILMN_3092673 1947.601 0
ILMN_2816356 24.14683 0.00877193
ILMN_2808939 504.5916 0
ILMN_2634564 222.7937 0
ILMN_2737647 11.81005 0.07017544
ILMN_2734484 232.5639 0
ILMN_2952292 42.26216 0
ILMN_2699078 -3.100962 0.8671679
ILMN_1213681 224.9899 0
ILMN_2735413 -0.6993378 0.6315789
ILMN_2735415 5.468093 0.2067669
ILMN_2891688 292.3067 0
ILMN_2637698 779.4506 0
ILMN_2674228 176.9885 0
ILMN_2601546 12.99207 0.06766918
ILMN_1230831 15.47199 0.04135338
ILMN_2848071 28.49138 0.006265664

Total number of rows: 25697

Table truncated, full table size 723 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Raw data are available on Series record

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