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Sample GSM948861 Query DataSets for GSM948861
Status Public on Apr 22, 2013
Title brain_SMC6_replicate2
Sample type RNA
Source name brain
Organism Mus musculus
Characteristics age: 19 weeks
mouse id: 30174940
genotype/variation: SMC6 mutant
strain: C57BL/6J-129ola-Fvb
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 2
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
Submission date Jun 15, 2012
Last update date Apr 22, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE38737 Genome-wide expression profiling analysis of a SMC6 mutant mouse model

Data table header descriptions
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1512.011 0
ILMN_2721178 458.6035 0
ILMN_3033922 559.8557 0
ILMN_3092673 1813.719 0
ILMN_2816356 11.16079 0.0989975
ILMN_2808939 454.3413 0
ILMN_2634564 243.166 0
ILMN_2737647 19.45241 0.02882206
ILMN_2734484 176.3312 0
ILMN_2952292 48.01995 0
ILMN_2699078 -1.713271 0.7330827
ILMN_1213681 235.0721 0
ILMN_2735413 5.664112 0.2055138
ILMN_2735415 5.779673 0.2042606
ILMN_2891688 245.2895 0
ILMN_2637698 763.2177 0
ILMN_2674228 158.6032 0
ILMN_2601546 24.49565 0.01879699
ILMN_1230831 20.95866 0.02380952
ILMN_2848071 27.80771 0.01253133

Total number of rows: 25697

Table truncated, full table size 726 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Raw data are available on Series record

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