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Sample GSM954875 Query DataSets for GSM954875
Status Public on Jul 03, 2013
Title 30180624_brain_wt_rep1
Sample type RNA
Source name brain_wt
Organism Mus musculus
Characteristics strain: C57BL/6N
gender: male
genotype/variation: wild type
age: 17 weeks
mouse id: 30180624
tissue: brain
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 1
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
Submission date Jul 02, 2012
Last update date Jul 03, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE39062 Genome-wide expression profiling analysis of a Hmgn1, 3 and 5 mutant mouse model

Data table header descriptions
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 2560.922 0
ILMN_2721178 603.429 0
ILMN_3033922 903.0176 0
ILMN_3092673 3743.552 0
ILMN_2816356 25.45457 0.01378446
ILMN_2808939 711.7166 0
ILMN_2634564 371.4049 0
ILMN_2737647 9.306327 0.1152882
ILMN_2734484 390.5819 0
ILMN_2952292 44.66501 0
ILMN_2699078 -4.499299 0.6917293
ILMN_1213681 284.1293 0
ILMN_2735413 5.629162 0.1829574
ILMN_2735415 0.725904 0.3609022
ILMN_2891688 592.4088 0
ILMN_2637698 1208.262 0
ILMN_2674228 252.0275 0
ILMN_2601546 8.649502 0.1265664
ILMN_1230831 14.81002 0.04761905
ILMN_2848071 22.05747 0.02255639

Total number of rows: 25697

Table truncated, full table size 721 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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