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Sample GSM954877 Query DataSets for GSM954877
Status Public on Jul 03, 2013
Title 30180622_brain_wt_rep3
Sample type RNA
Source name brain_wt
Organism Mus musculus
Characteristics strain: C57BL/6N
gender: male
genotype/variation: wild type
age: 17 weeks
mouse id: 30180622
tissue: brain
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 3
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
Submission date Jul 02, 2012
Last update date Jul 03, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE39062 Genome-wide expression profiling analysis of a Hmgn1, 3 and 5 mutant mouse model

Data table header descriptions
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 2676.599 0
ILMN_2721178 562.7164 0
ILMN_3033922 1007.156 0
ILMN_3092673 3929.185 0
ILMN_2816356 15.15146 0.05764411
ILMN_2808939 802.1567 0
ILMN_2634564 306.0435 0
ILMN_2737647 8.319939 0.1528822
ILMN_2734484 407.0927 0
ILMN_2952292 42.57357 0.001253133
ILMN_2699078 -8.526568 0.9573935
ILMN_1213681 284.9199 0
ILMN_2735413 -0.5539085 0.4135338
ILMN_2735415 -0.4227946 0.4122807
ILMN_2891688 519.8618 0
ILMN_2637698 1194.508 0
ILMN_2674228 272.0786 0
ILMN_2601546 2.656005 0.2957394
ILMN_1230831 8.821666 0.1428571
ILMN_2848071 18.96477 0.03884712

Total number of rows: 25697

Table truncated, full table size 725 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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