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Sample GSM954878 Query DataSets for GSM954878
Status Public on Jul 03, 2013
Title 30180626_brain_wt_rep4
Sample type RNA
Source name brain_wt
Organism Mus musculus
Characteristics strain: C57BL/6N
gender: male
genotype/variation: wild type
age: 17 weeks
mouse id: 30180626
tissue: brain
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 4
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
Submission date Jul 02, 2012
Last update date Jul 03, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE39062 Genome-wide expression profiling analysis of a Hmgn1, 3 and 5 mutant mouse model

Data table header descriptions
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 2572.658 0
ILMN_2721178 548.2178 0
ILMN_3033922 926.5901 0
ILMN_3092673 3451.043 0
ILMN_2816356 27.36123 0.01002506
ILMN_2808939 812.859 0
ILMN_2634564 307.9966 0
ILMN_2737647 14.31993 0.05639098
ILMN_2734484 386.9763 0
ILMN_2952292 51.39362 0
ILMN_2699078 -3.527446 0.622807
ILMN_1213681 305.2243 0
ILMN_2735413 0.3767331 0.377193
ILMN_2735415 4.853383 0.2092732
ILMN_2891688 478.5289 0
ILMN_2637698 1238.43 0
ILMN_2674228 253.2425 0
ILMN_2601546 9.031788 0.1203008
ILMN_1230831 4.765753 0.216792
ILMN_2848071 20.18566 0.03132832

Total number of rows: 25697

Table truncated, full table size 722 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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