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Sample GSM954879 Query DataSets for GSM954879
Status Public on Jul 03, 2013
Title 30180623_brain_Hmgn1_rep1
Sample type RNA
Source name brain_Hmgn1
Organism Mus musculus
Characteristics strain: C57BL/6N
gender: male
genotype/variation: Hmgn1 mutant
age: 17 weeks
mouse id: 30180623
tissue: brain
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 1
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
Submission date Jul 02, 2012
Last update date Jul 03, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE39062 Genome-wide expression profiling analysis of a Hmgn1, 3 and 5 mutant mouse model

Data table header descriptions
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 2706.366 0
ILMN_2721178 556.7062 0
ILMN_3033922 885.7537 0
ILMN_3092673 3691.533 0
ILMN_2816356 18.57463 0.02756892
ILMN_2808939 787.2467 0
ILMN_2634564 268.5753 0
ILMN_2737647 2.703715 0.3082707
ILMN_2734484 437.4002 0
ILMN_2952292 46.07015 0.003759399
ILMN_2699078 -3.281343 0.6215539
ILMN_1213681 247.1347 0
ILMN_2735413 0.9491662 0.3809524
ILMN_2735415 11.08958 0.08646616
ILMN_2891688 579.6436 0
ILMN_2637698 1212.284 0
ILMN_2674228 230.9775 0
ILMN_2601546 1.129963 0.3746867
ILMN_1230831 1.488803 0.3483709
ILMN_2848071 22.84877 0.01754386

Total number of rows: 25697

Table truncated, full table size 726 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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