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Sample GSM954881 Query DataSets for GSM954881
Status Public on Jul 03, 2013
Title 30180627_brain_Hmgn1_rep3
Sample type RNA
 
Source name brain_Hmgn1
Organism Mus musculus
Characteristics strain: C57BL/6N
gender: male
genotype/variation: Hmgn1 mutant
age: 17 weeks
mouse id: 30180627
tissue: brain
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 3
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
 
Submission date Jul 02, 2012
Last update date Jul 03, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
 
Platform ID GPL6885
Series (1)
GSE39062 Genome-wide expression profiling analysis of a Hmgn1, 3 and 5 mutant mouse model

Data table header descriptions
ID_REF
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 2606.302 0
ILMN_2721178 600.3965 0
ILMN_3033922 868.6069 0
ILMN_3092673 3789.15 0
ILMN_2816356 22.69053 0.02506266
ILMN_2808939 767.3509 0
ILMN_2634564 353.6966 0
ILMN_2737647 8.395208 0.1566416
ILMN_2734484 484.1483 0
ILMN_2952292 47.20224 0.001253133
ILMN_2699078 -3.049765 0.5889724
ILMN_1213681 297.0495 0
ILMN_2735413 3.959615 0.2619048
ILMN_2735415 -1.520354 0.4774436
ILMN_2891688 490.5186 0
ILMN_2637698 1222.335 0
ILMN_2674228 229.9727 0
ILMN_2601546 19.49852 0.03634085
ILMN_1230831 13.79459 0.0764411
ILMN_2848071 23.73837 0.02255639

Total number of rows: 25697

Table truncated, full table size 729 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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