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Sample GSM954883 Query DataSets for GSM954883
Status Public on Jul 03, 2013
Title 30180621_liver_wt_rep1
Sample type RNA
 
Source name liver_wt
Organism Mus musculus
Characteristics strain: C57BL/6N
gender: male
genotype/variation: wild type
age: 17 weeks
mouse id: 30180621
tissue: liver
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 1
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
 
Submission date Jul 02, 2012
Last update date Jul 03, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
 
Platform ID GPL6885
Series (1)
GSE39062 Genome-wide expression profiling analysis of a Hmgn1, 3 and 5 mutant mouse model

Data table header descriptions
ID_REF
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 2182.028 0
ILMN_2721178 543.055 0
ILMN_3033922 889.012 0
ILMN_3092673 4607.903 0
ILMN_2816356 7.123396 0.1729323
ILMN_2808939 1389.816 0
ILMN_2634564 336.2615 0
ILMN_2737647 10.56167 0.1115288
ILMN_2734484 480.5302 0
ILMN_2952292 64.85633 0
ILMN_2699078 -5.962934 0.7406015
ILMN_1213681 185.2304 0
ILMN_2735413 476.6559 0
ILMN_2735415 657.5743 0
ILMN_2891688 470.6616 0
ILMN_2637698 573.5872 0
ILMN_2674228 149.2271 0
ILMN_2601546 12.40538 0.0914787
ILMN_1230831 11.70621 0.09649123
ILMN_2848071 1324.698 0

Total number of rows: 25697

Table truncated, full table size 745 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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