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Sample GSM954887 Query DataSets for GSM954887
Status Public on Jul 03, 2013
Title 30180620_liver_Hmgn1_rep2
Sample type RNA
Source name liver_Hmgn1
Organism Mus musculus
Characteristics strain: C57BL/6N
gender: male
genotype/variation: Hmgn1 mutant
age: 17 weeks
mouse id: 30180620
tissue: liver
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 2
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
Submission date Jul 02, 2012
Last update date Jul 03, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE39062 Genome-wide expression profiling analysis of a Hmgn1, 3 and 5 mutant mouse model

Data table header descriptions
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 2331.298 0
ILMN_2721178 519.7657 0
ILMN_3033922 849.9313 0
ILMN_3092673 4411.544 0
ILMN_2816356 16.58491 0.04887218
ILMN_2808939 1226.134 0
ILMN_2634564 318.6576 0
ILMN_2737647 3.735908 0.2706767
ILMN_2734484 532.6068 0
ILMN_2952292 65.4698 0
ILMN_2699078 -11.57003 0.9561403
ILMN_1213681 206.2861 0
ILMN_2735413 510.1932 0
ILMN_2735415 683.3876 0
ILMN_2891688 530.1891 0
ILMN_2637698 638.6797 0
ILMN_2674228 144.6171 0
ILMN_2601546 9.622536 0.1278196
ILMN_1230831 17.14145 0.04511278
ILMN_2848071 1236.853 0

Total number of rows: 25697

Table truncated, full table size 749 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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