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Sample GSM954888 Query DataSets for GSM954888
Status Public on Jul 03, 2013
Title 30180627_liver_Hmgn1_rep3
Sample type RNA
Source name liver_Hmgn1
Organism Mus musculus
Characteristics strain: C57BL/6N
gender: male
genotype/variation: Hmgn1 mutant
age: 17 weeks
mouse id: 30180627
tissue: liver
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 3
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
Submission date Jul 02, 2012
Last update date Jul 03, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE39062 Genome-wide expression profiling analysis of a Hmgn1, 3 and 5 mutant mouse model

Data table header descriptions
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 2034.902 0
ILMN_2721178 434.5769 0
ILMN_3033922 806.6687 0
ILMN_3092673 4904.795 0
ILMN_2816356 17.04554 0.04887218
ILMN_2808939 1491.305 0
ILMN_2634564 293.5557 0
ILMN_2737647 6.003068 0.1992481
ILMN_2734484 405.7783 0
ILMN_2952292 52.55338 0
ILMN_2699078 -7.85965 0.8370928
ILMN_1213681 230.5931 0
ILMN_2735413 485.9995 0
ILMN_2735415 748.8653 0
ILMN_2891688 410.9245 0
ILMN_2637698 665.3533 0
ILMN_2674228 119.4038 0
ILMN_2601546 2.565533 0.3195489
ILMN_1230831 10.08295 0.1278196
ILMN_2848071 1261.318 0

Total number of rows: 25697

Table truncated, full table size 738 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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