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Sample GSM954889 Query DataSets for GSM954889
Status Public on Jul 03, 2013
Title 30180625_liver_Hmgn1_rep4
Sample type RNA
Source name liver_Hmgn1
Organism Mus musculus
Characteristics strain: C57BL/6N
gender: male
genotype/variation: Hmgn1 mutant
age: 17 weeks
mouse id: 30180625
tissue: liver
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 4
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
Submission date Jul 02, 2012
Last update date Jul 03, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE39062 Genome-wide expression profiling analysis of a Hmgn1, 3 and 5 mutant mouse model

Data table header descriptions
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 2085.709 0
ILMN_2721178 448.1223 0
ILMN_3033922 812.752 0
ILMN_3092673 4968.843 0
ILMN_2816356 17.03306 0.05388471
ILMN_2808939 1196.165 0
ILMN_2634564 330.0506 0
ILMN_2737647 1.459042 0.3533835
ILMN_2734484 468.7862 0
ILMN_2952292 103.5681 0
ILMN_2699078 -4.032695 0.6466165
ILMN_1213681 199.9046 0
ILMN_2735413 555.41 0
ILMN_2735415 649.6537 0
ILMN_2891688 492.7664 0
ILMN_2637698 558.3773 0
ILMN_2674228 128.794 0
ILMN_2601546 19.71827 0.03508772
ILMN_1230831 4.345695 0.2481203
ILMN_2848071 1435.809 0

Total number of rows: 25697

Table truncated, full table size 741 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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