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Sample GSM954890 Query DataSets for GSM954890
Status Public on Jul 03, 2013
Title 30180624_spleen_wt_rep1
Sample type RNA
Source name spleen_wt
Organism Mus musculus
Characteristics strain: C57BL/6N
gender: male
genotype/variation: wild type
age: 17 weeks
mouse id: 30180624
tissue: spleen
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 1
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
Submission date Jul 02, 2012
Last update date Jul 03, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE39062 Genome-wide expression profiling analysis of a Hmgn1, 3 and 5 mutant mouse model

Data table header descriptions
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 790.5055 0
ILMN_2721178 170.6239 0
ILMN_3033922 164.2003 0
ILMN_3092673 1049.587 0
ILMN_2816356 3.825032 0.05388471
ILMN_2808939 151.0248 0
ILMN_2634564 62.62729 0
ILMN_2737647 4.891082 0.03007519
ILMN_2734484 40.06344 0
ILMN_2952292 12.49542 0.006265664
ILMN_2699078 -2.22421 0.8934837
ILMN_1213681 48.2968 0
ILMN_2735413 -0.7726635 0.6290727
ILMN_2735415 0.9156886 0.273183
ILMN_2891688 166.7446 0
ILMN_2637698 452.9044 0
ILMN_2674228 107.3515 0
ILMN_2601546 -1.18433 0.7205514
ILMN_1230831 -0.8951552 0.6516291
ILMN_2848071 2.484031 0.1090226

Total number of rows: 25697

Table truncated, full table size 751 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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