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Sample GSM954891 Query DataSets for GSM954891
Status Public on Jul 03, 2013
Title 30180621_spleen_wt_rep2
Sample type RNA
 
Source name spleen_wt
Organism Mus musculus
Characteristics strain: C57BL/6N
gender: male
genotype/variation: wild type
age: 17 weeks
mouse id: 30180621
tissue: spleen
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 2
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
 
Submission date Jul 02, 2012
Last update date Jul 03, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
 
Platform ID GPL6885
Series (1)
GSE39062 Genome-wide expression profiling analysis of a Hmgn1, 3 and 5 mutant mouse model

Data table header descriptions
ID_REF
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 796.5635 0
ILMN_2721178 140.1582 0
ILMN_3033922 137.2884 0
ILMN_3092673 917.9529 0
ILMN_2816356 6.543268 0.03007519
ILMN_2808939 176.3429 0
ILMN_2634564 52.72617 0
ILMN_2737647 -0.8810138 0.6729323
ILMN_2734484 44.9785 0
ILMN_2952292 10.09374 0.007518797
ILMN_2699078 2.647359 0.1077694
ILMN_1213681 46.45958 0
ILMN_2735413 -0.6888501 0.6278195
ILMN_2735415 0.6991126 0.3358396
ILMN_2891688 144.5371 0
ILMN_2637698 497.5845 0
ILMN_2674228 128.8115 0
ILMN_2601546 0.7947524 0.3258145
ILMN_1230831 -4.459644 0.9949875
ILMN_2848071 4.750602 0.04135338

Total number of rows: 25697

Table truncated, full table size 755 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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