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Sample GSM954894 Query DataSets for GSM954894
Status Public on Jul 03, 2013
Title 30180623_spleen_Hmgn1_rep1
Sample type RNA
 
Source name spleen_Hmgn1
Organism Mus musculus
Characteristics strain: C57BL/6N
gender: male
genotype/variation: Hmgn1 mutant
age: 17 weeks
mouse id: 30180623
tissue: spleen
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 1
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
 
Submission date Jul 02, 2012
Last update date Jul 03, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
 
Platform ID GPL6885
Series (1)
GSE39062 Genome-wide expression profiling analysis of a Hmgn1, 3 and 5 mutant mouse model

Data table header descriptions
ID_REF
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 815.7388 0
ILMN_2721178 155.078 0
ILMN_3033922 111.5444 0
ILMN_3092673 875.4109 0
ILMN_2816356 9.458216 0.01378446
ILMN_2808939 226.2759 0
ILMN_2634564 79.67048 0
ILMN_2737647 3.278047 0.1190476
ILMN_2734484 45.4972 0
ILMN_2952292 8.856059 0.01629073
ILMN_2699078 -1.479352 0.7756892
ILMN_1213681 50.06273 0
ILMN_2735413 2.494389 0.1516291
ILMN_2735415 4.085321 0.08145364
ILMN_2891688 151.7239 0
ILMN_2637698 449.3911 0
ILMN_2674228 133.3231 0
ILMN_2601546 2.533024 0.1478697
ILMN_1230831 0.3995646 0.424812
ILMN_2848071 1.24839 0.2669173

Total number of rows: 25697

Table truncated, full table size 753 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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