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Sample GSM954896 Query DataSets for GSM954896
Status Public on Jul 03, 2013
Title 30180627_spleen_Hmgn1_rep3
Sample type RNA
Source name spleen_Hmgn1
Organism Mus musculus
Characteristics strain: C57BL/6N
gender: male
genotype/variation: Hmgn1 mutant
age: 17 weeks
mouse id: 30180627
tissue: spleen
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 3
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
Submission date Jul 02, 2012
Last update date Jul 03, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE39062 Genome-wide expression profiling analysis of a Hmgn1, 3 and 5 mutant mouse model

Data table header descriptions
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 794.7218 0
ILMN_2721178 130.1348 0
ILMN_3033922 84.12639 0
ILMN_3092673 853.642 0
ILMN_2816356 1.141181 0.2919799
ILMN_2808939 192.6624 0
ILMN_2634564 95.70409 0
ILMN_2737647 -0.6271552 0.6340852
ILMN_2734484 28.38302 0
ILMN_2952292 16.64062 0.005012531
ILMN_2699078 -0.5659086 0.6215539
ILMN_1213681 45.08889 0
ILMN_2735413 0.8076996 0.3333333
ILMN_2735415 -0.665405 0.6428571
ILMN_2891688 174.963 0
ILMN_2637698 419.1996 0
ILMN_2674228 125.2599 0
ILMN_2601546 0.7381348 0.3383459
ILMN_1230831 -1.472305 0.7781955
ILMN_2848071 0.5244602 0.3759398

Total number of rows: 25697

Table truncated, full table size 756 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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