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Sample GSM954900 Query DataSets for GSM954900
Status Public on Jul 03, 2013
Title 30180622_thymus_wt_rep3
Sample type RNA
 
Source name thymus_wt
Organism Mus musculus
Characteristics strain: C57BL/6N
gender: male
genotype/variation: wild type
age: 17 weeks
mouse id: 30180622
tissue: thymus
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 3
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
 
Submission date Jul 02, 2012
Last update date Jul 03, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
 
Platform ID GPL6885
Series (1)
GSE39062 Genome-wide expression profiling analysis of a Hmgn1, 3 and 5 mutant mouse model

Data table header descriptions
ID_REF
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1585.223 0
ILMN_2721178 335.3746 0
ILMN_3033922 156.535 0
ILMN_3092673 858.4277 0
ILMN_2816356 6.449946 0.04260652
ILMN_2808939 183.7173 0
ILMN_2634564 104.217 0
ILMN_2737647 1.500231 0.235589
ILMN_2734484 59.58479 0
ILMN_2952292 24.02747 0.001253133
ILMN_2699078 -0.6571172 0.5964912
ILMN_1213681 72.46913 0
ILMN_2735413 1.339325 0.2606516
ILMN_2735415 2.36394 0.1578947
ILMN_2891688 168.1815 0
ILMN_2637698 791.9525 0
ILMN_2674228 150.5287 0
ILMN_2601546 1.571888 0.2305764
ILMN_1230831 -1.755491 0.8182957
ILMN_2848071 5.69265 0.05012531

Total number of rows: 25697

Table truncated, full table size 752 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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