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Sample GSM954904 Query DataSets for GSM954904
Status Public on Jul 03, 2013
Title 30180627_thymus_Hmgn1_rep3
Sample type RNA
Source name thymus_Hmgn1
Organism Mus musculus
Characteristics strain: C57BL/6N
gender: male
genotype/variation: Hmgn1 mutant
age: 17 weeks
mouse id: 30180627
tissue: thymus
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 3
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
Submission date Jul 02, 2012
Last update date Jul 03, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE39062 Genome-wide expression profiling analysis of a Hmgn1, 3 and 5 mutant mouse model

Data table header descriptions
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1448.576 0
ILMN_2721178 272.8922 0
ILMN_3033922 139.1945 0
ILMN_3092673 806.3333 0
ILMN_2816356 1.992911 0.2005012
ILMN_2808939 173.4305 0
ILMN_2634564 122.3029 0
ILMN_2737647 -1.064246 0.7042606
ILMN_2734484 72.8801 0
ILMN_2952292 29.40089 0.001253133
ILMN_2699078 -0.410079 0.5614035
ILMN_1213681 57.44481 0
ILMN_2735413 -1.859224 0.8483709
ILMN_2735415 0.1687582 0.4473684
ILMN_2891688 68.95075 0
ILMN_2637698 749.7661 0
ILMN_2674228 175.1937 0
ILMN_2601546 -0.428223 0.5639098
ILMN_1230831 7.159335 0.04135338
ILMN_2848071 2.476872 0.1729323

Total number of rows: 25697

Table truncated, full table size 753 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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