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Sample GSM954905 Query DataSets for GSM954905
Status Public on Jul 03, 2013
Title 30180625_thymus_Hmgn1_rep4
Sample type RNA
Source name thymus_Hmgn1
Organism Mus musculus
Characteristics strain: C57BL/6N
gender: male
genotype/variation: Hmgn1 mutant
age: 17 weeks
mouse id: 30180625
tissue: thymus
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 4
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
Submission date Jul 02, 2012
Last update date Jul 03, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE39062 Genome-wide expression profiling analysis of a Hmgn1, 3 and 5 mutant mouse model

Data table header descriptions
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1594.935 0
ILMN_2721178 318.2577 0
ILMN_3033922 136.766 0
ILMN_3092673 762.1342 0
ILMN_2816356 1.813487 0.2005012
ILMN_2808939 182.2856 0
ILMN_2634564 114.3961 0
ILMN_2737647 -0.4386759 0.5689223
ILMN_2734484 67.9957 0
ILMN_2952292 37.09746 0
ILMN_2699078 -0.862748 0.6553885
ILMN_1213681 52.88018 0
ILMN_2735413 12.66936 0.01002506
ILMN_2735415 -1.060353 0.7055138
ILMN_2891688 109.8144 0
ILMN_2637698 671.6813 0
ILMN_2674228 187.0612 0
ILMN_2601546 -0.84657 0.6491228
ILMN_1230831 -2.837791 0.9473684
ILMN_2848071 6.67962 0.04135338

Total number of rows: 25697

Table truncated, full table size 747 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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