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Sample GSM954908 Query DataSets for GSM954908
Status Public on Jul 03, 2013
Title 30184790_brain_wt_rep3
Sample type RNA
Source name brain_wt
Organism Mus musculus
Characteristics strain: C57BL/6N
gender: male
genotype/variation: wild type
age: 17 weeks
mouse id: 30184790
tissue: brain
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 3
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
Submission date Jul 02, 2012
Last update date Jul 03, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE39062 Genome-wide expression profiling analysis of a Hmgn1, 3 and 5 mutant mouse model

Data table header descriptions
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 2260.483 0
ILMN_2721178 555.61 0
ILMN_3033922 701.55 0
ILMN_3092673 3079.72 0
ILMN_2816356 7.213981 0.09774436
ILMN_2808939 723.6384 0
ILMN_2634564 265.6555 0
ILMN_2737647 11.48141 0.03884712
ILMN_2734484 488.6143 0
ILMN_2952292 40.58694 0
ILMN_2699078 -6.701861 0.9674186
ILMN_1213681 228.1096 0
ILMN_2735413 -6.080476 0.9586466
ILMN_2735415 3.439251 0.2067669
ILMN_2891688 512.9498 0
ILMN_2637698 982.9342 0
ILMN_2674228 144.1949 0
ILMN_2601546 3.67632 0.2030075
ILMN_1230831 8.929005 0.06015038
ILMN_2848071 28.43524 0.001253133

Total number of rows: 25697

Table truncated, full table size 720 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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