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Sample GSM954910 Query DataSets for GSM954910
Status Public on Jul 03, 2013
Title 30184789_brain_Hmgn3_rep1
Sample type RNA
 
Source name brain_Hmgn3
Organism Mus musculus
Characteristics strain: C57BL/6N
gender: male
genotype/variation: Hmgn3 mutant
age: 17 weeks
mouse id: 30184789
tissue: brain
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 1
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
 
Submission date Jul 02, 2012
Last update date Jul 03, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
 
Platform ID GPL6885
Series (1)
GSE39062 Genome-wide expression profiling analysis of a Hmgn1, 3 and 5 mutant mouse model

Data table header descriptions
ID_REF
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1962.693 0
ILMN_2721178 426.9346 0
ILMN_3033922 614.5489 0
ILMN_3092673 2745.992 0
ILMN_2816356 3.510558 0.216792
ILMN_2808939 547.6193 0
ILMN_2634564 232.9599 0
ILMN_2737647 12.66879 0.01503759
ILMN_2734484 439.3523 0
ILMN_2952292 50.10477 0
ILMN_2699078 -6.558945 0.9573935
ILMN_1213681 200.4593 0
ILMN_2735413 -7.783584 0.9749373
ILMN_2735415 2.266399 0.3120301
ILMN_2891688 489.5471 0
ILMN_2637698 963.7733 0
ILMN_2674228 144.1882 0
ILMN_2601546 3.802147 0.1942356
ILMN_1230831 8.770836 0.06265664
ILMN_2848071 25.5757 0

Total number of rows: 25697

Table truncated, full table size 711 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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