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Sample GSM954912 Query DataSets for GSM954912
Status Public on Jul 03, 2013
Title 30184786_brain_Hmgn3_rep3
Sample type RNA
Source name brain_Hmgn3
Organism Mus musculus
Characteristics strain: C57BL/6N
gender: male
genotype/variation: Hmgn3 mutant
age: 17 weeks
mouse id: 30184786
tissue: brain
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 3
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
Submission date Jul 02, 2012
Last update date Jul 03, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE39062 Genome-wide expression profiling analysis of a Hmgn1, 3 and 5 mutant mouse model

Data table header descriptions
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 2148.111 0
ILMN_2721178 438.8746 0
ILMN_3033922 621.6279 0
ILMN_3092673 2662.231 0
ILMN_2816356 5.605187 0.1152882
ILMN_2808939 620.0181 0
ILMN_2634564 195.8194 0
ILMN_2737647 23.27397 0
ILMN_2734484 425.4502 0
ILMN_2952292 31.8104 0
ILMN_2699078 -2.742073 0.7443609
ILMN_1213681 278.7366 0
ILMN_2735413 -3.964358 0.8258145
ILMN_2735415 -1.2688 0.6052632
ILMN_2891688 430.4141 0
ILMN_2637698 1014.232 0
ILMN_2674228 125.3921 0
ILMN_2601546 5.265325 0.1278196
ILMN_1230831 2.368987 0.283208
ILMN_2848071 10.70895 0.02882206

Total number of rows: 25697

Table truncated, full table size 713 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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