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Sample GSM954913 Query DataSets for GSM954913
Status Public on Jul 03, 2013
Title 30184787_brain_Hmgn3_rep4
Sample type RNA
Source name brain_Hmgn3
Organism Mus musculus
Characteristics strain: C57BL/6N
gender: male
genotype/variation: Hmgn3 mutant
age: 17 weeks
mouse id: 30184787
tissue: brain
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 4
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
Submission date Jul 02, 2012
Last update date Jul 03, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE39062 Genome-wide expression profiling analysis of a Hmgn1, 3 and 5 mutant mouse model

Data table header descriptions
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 2187.496 0
ILMN_2721178 450.6534 0
ILMN_3033922 501.5113 0
ILMN_3092673 3198.611 0
ILMN_2816356 -1.911971 0.7443609
ILMN_2808939 449.8915 0
ILMN_2634564 298.8307 0
ILMN_2737647 -0.05495999 0.5877193
ILMN_2734484 329.9456 0
ILMN_2952292 60.49276 0
ILMN_2699078 1.138943 0.5050125
ILMN_1213681 221.4834 0
ILMN_2735413 6.968184 0.2180451
ILMN_2735415 6.967883 0.2180451
ILMN_2891688 282.0587 0
ILMN_2637698 1102.854 0
ILMN_2674228 162.772 0
ILMN_2601546 3.432482 0.3496241
ILMN_1230831 0.1298025 0.5739349
ILMN_2848071 21.44442 0.03884712

Total number of rows: 25697

Table truncated, full table size 729 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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