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Sample GSM954916 Query DataSets for GSM954916
Status Public on Jul 03, 2013
Title 30184790_liver_wt_rep3
Sample type RNA
 
Source name liver_wt
Organism Mus musculus
Characteristics strain: C57BL/6N
gender: male
genotype/variation: wild type
age: 17 weeks
mouse id: 30184790
tissue: liver
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 3
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
 
Submission date Jul 02, 2012
Last update date Jul 03, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum München GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
 
Platform ID GPL6885
Series (1)
GSE39062 Genome-wide expression profiling analysis of a Hmgn1, 3 and 5 mutant mouse model

Data table header descriptions
ID_REF
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 802.4736 0
ILMN_2721178 232.2548 0
ILMN_3033922 316.2692 0
ILMN_3092673 2159.223 0
ILMN_2816356 6.67704 0.07017544
ILMN_2808939 550.8848 0
ILMN_2634564 169.5771 0
ILMN_2737647 -1.768198 0.6804512
ILMN_2734484 115.8749 0
ILMN_2952292 22.8467 0
ILMN_2699078 -2.465225 0.7543859
ILMN_1213681 58.63309 0
ILMN_2735413 248.0582 0
ILMN_2735415 306.5445 0
ILMN_2891688 134.9421 0
ILMN_2637698 149.1934 0
ILMN_2674228 41.76958 0
ILMN_2601546 0.1999617 0.4548872
ILMN_1230831 -2.335469 0.7418546
ILMN_2848071 481.1835 0

Total number of rows: 25697

Table truncated, full table size 746 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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