NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM954924 Query DataSets for GSM954924
Status Public on Jul 03, 2013
Title 30184790_spleen_wt_rep3
Sample type RNA
 
Source name spleen_wt
Organism Mus musculus
Characteristics strain: C57BL/6N
gender: male
genotype/variation: wild type
age: 17 weeks
mouse id: 30184790
tissue: spleen
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 3
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
 
Submission date Jul 02, 2012
Last update date Jul 03, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
 
Platform ID GPL6885
Series (1)
GSE39062 Genome-wide expression profiling analysis of a Hmgn1, 3 and 5 mutant mouse model

Data table header descriptions
ID_REF
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 652.3104 0
ILMN_2721178 99.52419 0
ILMN_3033922 94.30575 0
ILMN_3092673 752.3423 0
ILMN_2816356 2.947943 0.06766918
ILMN_2808939 108.2683 0
ILMN_2634564 54.99645 0
ILMN_2737647 1.108091 0.20802
ILMN_2734484 20.93693 0
ILMN_2952292 8.087834 0.01378446
ILMN_2699078 -0.5810354 0.593985
ILMN_1213681 39.7479 0
ILMN_2735413 -1.324065 0.802005
ILMN_2735415 -1.933439 0.8897243
ILMN_2891688 64.16514 0
ILMN_2637698 251.8882 0
ILMN_2674228 84.49149 0
ILMN_2601546 0.2828802 0.3659148
ILMN_1230831 0.5679185 0.2919799
ILMN_2848071 4.497382 0.03759398

Total number of rows: 25697

Table truncated, full table size 760 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap