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Sample GSM954925 Query DataSets for GSM954925
Status Public on Jul 03, 2013
Title 30184788_spleen_wt_rep4
Sample type RNA
Source name spleen_wt
Organism Mus musculus
Characteristics strain: C57BL/6N
gender: male
genotype/variation: wild type
age: 17 weeks
mouse id: 30184788
tissue: spleen
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 4
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
Submission date Jul 02, 2012
Last update date Jul 03, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE39062 Genome-wide expression profiling analysis of a Hmgn1, 3 and 5 mutant mouse model

Data table header descriptions
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 598.1921 0
ILMN_2721178 104.0475 0
ILMN_3033922 70.31953 0
ILMN_3092673 674.1837 0
ILMN_2816356 0.2382536 0.4035088
ILMN_2808939 124.1132 0
ILMN_2634564 30.19289 0.001253133
ILMN_2737647 6.311673 0.02631579
ILMN_2734484 9.197783 0.01253133
ILMN_2952292 11.83135 0.003759399
ILMN_2699078 -0.6485932 0.6340852
ILMN_1213681 37.4558 0
ILMN_2735413 -0.6759493 0.641604
ILMN_2735415 2.204355 0.1491228
ILMN_2891688 76.6979 0
ILMN_2637698 250.401 0
ILMN_2674228 89.11063 0
ILMN_2601546 2.047813 0.160401
ILMN_1230831 0.7318089 0.3095238
ILMN_2848071 4.17561 0.0651629

Total number of rows: 25697

Table truncated, full table size 774 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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