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Sample GSM954931 Query DataSets for GSM954931
Status Public on Jul 03, 2013
Title 30184793_thymus_wt_rep2
Sample type RNA
 
Source name thymus_wt
Organism Mus musculus
Characteristics strain: C57BL/6N
gender: male
genotype/variation: wild type
age: 17 weeks
mouse id: 30184793
tissue: thymus
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 2
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
 
Submission date Jul 02, 2012
Last update date Jul 03, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
 
Platform ID GPL6885
Series (1)
GSE39062 Genome-wide expression profiling analysis of a Hmgn1, 3 and 5 mutant mouse model

Data table header descriptions
ID_REF
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 950.9019 0
ILMN_2721178 165.1324 0
ILMN_3033922 76.15375 0
ILMN_3092673 484.3722 0
ILMN_2816356 2.276522 0.1303258
ILMN_2808939 105.4077 0
ILMN_2634564 57.64669 0
ILMN_2737647 -0.05443101 0.5112782
ILMN_2734484 30.9051 0
ILMN_2952292 6.538795 0.02130326
ILMN_2699078 0.9093993 0.3120301
ILMN_1213681 46.16224 0
ILMN_2735413 -1.381712 0.79198
ILMN_2735415 -3.25035 0.9611529
ILMN_2891688 46.13544 0
ILMN_2637698 385.2864 0
ILMN_2674228 51.35486 0
ILMN_2601546 -0.2911797 0.5639098
ILMN_1230831 -3.67839 0.9824561
ILMN_2848071 0.6895153 0.3433584

Total number of rows: 25697

Table truncated, full table size 768 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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