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Sample GSM954935 Query DataSets for GSM954935
Status Public on Jul 03, 2013
Title 30184791_thymus_Hmgn3_rep2
Sample type RNA
 
Source name thymus_Hmgn3
Organism Mus musculus
Characteristics strain: C57BL/6N
gender: male
genotype/variation: Hmgn3 mutant
age: 17 weeks
mouse id: 30184791
tissue: thymus
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 2
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
 
Submission date Jul 02, 2012
Last update date Jul 03, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
 
Platform ID GPL6885
Series (1)
GSE39062 Genome-wide expression profiling analysis of a Hmgn1, 3 and 5 mutant mouse model

Data table header descriptions
ID_REF
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 921.184 0
ILMN_2721178 163.9385 0
ILMN_3033922 79.79907 0
ILMN_3092673 585.3074 0
ILMN_2816356 1.714414 0.1942356
ILMN_2808939 94.72558 0
ILMN_2634564 40.96231 0
ILMN_2737647 4.464208 0.06265664
ILMN_2734484 42.28059 0
ILMN_2952292 21.35841 0.001253133
ILMN_2699078 -0.6415014 0.6340852
ILMN_1213681 27.98511 0
ILMN_2735413 0.918458 0.3132832
ILMN_2735415 -2.673023 0.9310777
ILMN_2891688 63.48756 0
ILMN_2637698 392.217 0
ILMN_2674228 108.8334 0
ILMN_2601546 1.507809 0.2243108
ILMN_1230831 -0.4413319 0.5964912
ILMN_2848071 -2.179343 0.8922306

Total number of rows: 25697

Table truncated, full table size 765 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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