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Sample GSM954936 Query DataSets for GSM954936
Status Public on Jul 03, 2013
Title 30184786_thymus_Hmgn3_rep3
Sample type RNA
 
Source name thymus_Hmgn3
Organism Mus musculus
Characteristics strain: C57BL/6N
gender: male
genotype/variation: Hmgn3 mutant
age: 17 weeks
mouse id: 30184786
tissue: thymus
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 3
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
 
Submission date Jul 02, 2012
Last update date Jul 03, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
 
Platform ID GPL6885
Series (1)
GSE39062 Genome-wide expression profiling analysis of a Hmgn1, 3 and 5 mutant mouse model

Data table header descriptions
ID_REF
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 974.7778 0
ILMN_2721178 147.5897 0
ILMN_3033922 76.82133 0
ILMN_3092673 563.5466 0
ILMN_2816356 -0.7827617 0.679198
ILMN_2808939 84.8397 0
ILMN_2634564 44.45067 0
ILMN_2737647 1.586632 0.2005012
ILMN_2734484 31.75844 0
ILMN_2952292 21.61158 0
ILMN_2699078 -1.486025 0.8057644
ILMN_1213681 36.29607 0
ILMN_2735413 -5.06801 0.9974937
ILMN_2735415 3.781729 0.05764411
ILMN_2891688 45.96557 0
ILMN_2637698 406.5704 0
ILMN_2674228 93.11892 0
ILMN_2601546 2.817713 0.1027569
ILMN_1230831 1.570415 0.2017544
ILMN_2848071 -1.702866 0.8358396

Total number of rows: 25697

Table truncated, full table size 758 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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