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Sample GSM954940 Query DataSets for GSM954940
Status Public on Jul 03, 2013
Title 30193974_brain_wt_rep3
Sample type RNA
 
Source name brain_wt
Organism Mus musculus
Characteristics strain: C57BL/6N
gender: male
genotype/variation: wild type
age: 17 weeks
mouse id: 30193974
tissue: brain
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 3
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
 
Submission date Jul 02, 2012
Last update date Jul 03, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
 
Platform ID GPL6885
Series (1)
GSE39062 Genome-wide expression profiling analysis of a Hmgn1, 3 and 5 mutant mouse model

Data table header descriptions
ID_REF
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 2949.482 0
ILMN_2721178 603.16 0
ILMN_3033922 847.8455 0
ILMN_3092673 4172.224 0
ILMN_2816356 37.09873 0
ILMN_2808939 776.1837 0
ILMN_2634564 275.936 0
ILMN_2737647 7.52044 0.09774436
ILMN_2734484 380.3354 0
ILMN_2952292 33.40111 0
ILMN_2699078 2.863041 0.2368421
ILMN_1213681 379.6468 0
ILMN_2735413 6.426334 0.1165414
ILMN_2735415 6.782921 0.1102757
ILMN_2891688 592.501 0
ILMN_2637698 1352.494 0
ILMN_2674228 223.2258 0
ILMN_2601546 8.771873 0.0764411
ILMN_1230831 9.866275 0.05639098
ILMN_2848071 32.44677 0

Total number of rows: 25697

Table truncated, full table size 715 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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