GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM954943 Query DataSets for GSM954943
Status Public on Jul 03, 2013
Title 30189371_brain_Hmgn5_rep2
Sample type RNA
Source name brain_Hmgn5
Organism Mus musculus
Characteristics strain: C57BL/6N
gender: male
genotype/variation: Hmgn5 mutant
age: 17 weeks
mouse id: 30189371
tissue: brain
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 2
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
Submission date Jul 02, 2012
Last update date Jul 03, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE39062 Genome-wide expression profiling analysis of a Hmgn1, 3 and 5 mutant mouse model

Data table header descriptions
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 3040.026 0
ILMN_2721178 577.8861 0
ILMN_3033922 839.5677 0
ILMN_3092673 3832.35 0
ILMN_2816356 51.00788 0
ILMN_2808939 825.7983 0
ILMN_2634564 294.2908 0
ILMN_2737647 12.67592 0.03007519
ILMN_2734484 437.4395 0
ILMN_2952292 37.41025 0
ILMN_2699078 -7.31988 0.9736842
ILMN_1213681 370.5941 0
ILMN_2735413 9.628425 0.06766918
ILMN_2735415 10.01812 0.0651629
ILMN_2891688 538.4166 0
ILMN_2637698 1442.395 0
ILMN_2674228 244.2695 0
ILMN_2601546 12.98476 0.03007519
ILMN_1230831 5.852421 0.1265664
ILMN_2848071 27.05953 0.002506266

Total number of rows: 25697

Table truncated, full table size 720 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap