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Sample GSM954945 Query DataSets for GSM954945
Status Public on Jul 03, 2013
Title 30189375_brain_Hmgn5_rep4
Sample type RNA
Source name brain_Hmgn5
Organism Mus musculus
Characteristics strain: C57BL/6N
gender: male
genotype/variation: Hmgn5 mutant
age: 17 weeks
mouse id: 30189375
tissue: brain
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 4
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
Submission date Jul 02, 2012
Last update date Jul 03, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE39062 Genome-wide expression profiling analysis of a Hmgn1, 3 and 5 mutant mouse model

Data table header descriptions
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 3065.043 0
ILMN_2721178 879.9956 0
ILMN_3033922 1044.873 0
ILMN_3092673 3861.101 0
ILMN_2816356 17.9988 0.01879699
ILMN_2808939 892.8832 0
ILMN_2634564 305.8486 0
ILMN_2737647 5.146355 0.1491228
ILMN_2734484 329.5617 0
ILMN_2952292 50.3097 0
ILMN_2699078 -5.758395 0.9486216
ILMN_1213681 354.0381 0
ILMN_2735413 5.087259 0.1503759
ILMN_2735415 8.968475 0.07518797
ILMN_2891688 498.9848 0
ILMN_2637698 1285.273 0
ILMN_2674228 255.4793 0
ILMN_2601546 -2.686398 0.7268171
ILMN_1230831 16.15234 0.02506266
ILMN_2848071 8.580537 0.08145364

Total number of rows: 25697

Table truncated, full table size 718 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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