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Sample GSM954948 Query DataSets for GSM954948
Status Public on Jul 03, 2013
Title 30189373_liver_wt_rep3
Sample type RNA
 
Source name liver_wt
Organism Mus musculus
Characteristics strain: C57BL/6N
gender: male
genotype/variation: wild type
age: 17 weeks
mouse id: 30189373
tissue: liver
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 3
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
 
Submission date Jul 02, 2012
Last update date Jul 03, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
 
Platform ID GPL6885
Series (1)
GSE39062 Genome-wide expression profiling analysis of a Hmgn1, 3 and 5 mutant mouse model

Data table header descriptions
ID_REF
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 2516.361 0
ILMN_2721178 605.2672 0
ILMN_3033922 732.9138 0
ILMN_3092673 5281.215 0
ILMN_2816356 39.90704 0
ILMN_2808939 1301.929 0
ILMN_2634564 227.4546 0
ILMN_2737647 2.195104 0.3283208
ILMN_2734484 360.5304 0
ILMN_2952292 45.3769 0
ILMN_2699078 1.962371 0.3383459
ILMN_1213681 229.5641 0
ILMN_2735413 419.6481 0
ILMN_2735415 636.371 0
ILMN_2891688 389.1501 0
ILMN_2637698 664.5128 0
ILMN_2674228 131.4236 0
ILMN_2601546 12.7558 0.03508772
ILMN_1230831 16.70772 0.006265664
ILMN_2848071 1158.25 0

Total number of rows: 25697

Table truncated, full table size 734 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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