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Sample GSM954950 Query DataSets for GSM954950
Status Public on Jul 03, 2013
Title 30189371_liver_Hmgn5_rep2
Sample type RNA
Source name liver_Hmgn5
Organism Mus musculus
Characteristics strain: C57BL/6N
gender: male
genotype/variation: Hmgn5 mutant
age: 17 weeks
mouse id: 30189371
tissue: liver
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 2
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
Submission date Jul 02, 2012
Last update date Jul 03, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE39062 Genome-wide expression profiling analysis of a Hmgn1, 3 and 5 mutant mouse model

Data table header descriptions
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 2414.787 0
ILMN_2721178 498.371 0
ILMN_3033922 883.9167 0
ILMN_3092673 5213.888 0
ILMN_2816356 23.19716 0.001253133
ILMN_2808939 1404.351 0
ILMN_2634564 260.3724 0
ILMN_2737647 1.827793 0.3370927
ILMN_2734484 385.312 0
ILMN_2952292 46.90174 0
ILMN_2699078 -1.629801 0.5726817
ILMN_1213681 251.0172 0
ILMN_2735413 560.1752 0
ILMN_2735415 671.8643 0
ILMN_2891688 358.7389 0
ILMN_2637698 559.988 0
ILMN_2674228 175.3601 0
ILMN_2601546 6.552571 0.1290727
ILMN_1230831 -0.05592367 0.4636591
ILMN_2848071 1195.962 0

Total number of rows: 25697

Table truncated, full table size 739 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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