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Sample GSM954951 Query DataSets for GSM954951
Status Public on Jul 03, 2013
Title 30189376_liver_Hmgn5_rep3
Sample type RNA
 
Source name liver_Hmgn5
Organism Mus musculus
Characteristics strain: C57BL/6N
gender: male
genotype/variation: Hmgn5 mutant
age: 17 weeks
mouse id: 30189376
tissue: liver
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 3
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
 
Submission date Jul 02, 2012
Last update date Jul 03, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
 
Platform ID GPL6885
Series (1)
GSE39062 Genome-wide expression profiling analysis of a Hmgn1, 3 and 5 mutant mouse model

Data table header descriptions
ID_REF
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 2837.088 0
ILMN_2721178 551.2712 0
ILMN_3033922 741.9034 0
ILMN_3092673 6143.567 0
ILMN_2816356 33.28178 0
ILMN_2808939 1490.824 0
ILMN_2634564 253.0359 0
ILMN_2737647 5.793417 0.1453634
ILMN_2734484 419.6481 0
ILMN_2952292 45.10874 0
ILMN_2699078 -2.182862 0.6065163
ILMN_1213681 215.5754 0
ILMN_2735413 459.1922 0
ILMN_2735415 530.3953 0
ILMN_2891688 429.8969 0
ILMN_2637698 581.2868 0
ILMN_2674228 132.5083 0
ILMN_2601546 10.31788 0.05012531
ILMN_1230831 2.930543 0.2619048
ILMN_2848071 1284.642 0

Total number of rows: 25697

Table truncated, full table size 730 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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