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Sample GSM954952 Query DataSets for GSM954952
Status Public on Jul 03, 2013
Title 30189375_liver_Hmgn5_rep4
Sample type RNA
Source name liver_Hmgn5
Organism Mus musculus
Characteristics strain: C57BL/6N
gender: male
genotype/variation: Hmgn5 mutant
age: 17 weeks
mouse id: 30189375
tissue: liver
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 4
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
Submission date Jul 02, 2012
Last update date Jul 03, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE39062 Genome-wide expression profiling analysis of a Hmgn1, 3 and 5 mutant mouse model

Data table header descriptions
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 2541.189 0
ILMN_2721178 569.288 0
ILMN_3033922 886.3332 0
ILMN_3092673 5545.496 0
ILMN_2816356 12.36527 0.05513784
ILMN_2808939 1283.84 0
ILMN_2634564 259.948 0
ILMN_2737647 -0.07716826 0.4661654
ILMN_2734484 449.2677 0
ILMN_2952292 77.8083 0
ILMN_2699078 1.89611 0.3283208
ILMN_1213681 243.0382 0
ILMN_2735413 431.2689 0
ILMN_2735415 695.306 0
ILMN_2891688 390.9265 0
ILMN_2637698 573.7945 0
ILMN_2674228 154.6956 0
ILMN_2601546 7.877037 0.1140351
ILMN_1230831 1.655689 0.3370927
ILMN_2848071 1385.49 0

Total number of rows: 25697

Table truncated, full table size 738 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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