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Sample GSM954954 Query DataSets for GSM954954
Status Public on Jul 03, 2013
Title 30189377_spleen_wt_rep2
Sample type RNA
 
Source name spleen_wt
Organism Mus musculus
Characteristics strain: C57BL/6N
gender: male
genotype/variation: wild type
age: 17 weeks
mouse id: 30189377
tissue: spleen
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 2
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
 
Submission date Jul 02, 2012
Last update date Jul 03, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
 
Platform ID GPL6885
Series (1)
GSE39062 Genome-wide expression profiling analysis of a Hmgn1, 3 and 5 mutant mouse model

Data table header descriptions
ID_REF
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 580.174 0
ILMN_2721178 94.30146 0
ILMN_3033922 76.43243 0
ILMN_3092673 540.4132 0
ILMN_2816356 5.547966 0.01378446
ILMN_2808939 106.3361 0
ILMN_2634564 20.04789 0
ILMN_2737647 -0.566627 0.6441103
ILMN_2734484 14.30908 0.003759399
ILMN_2952292 9.144238 0.005012531
ILMN_2699078 -1.419445 0.8258145
ILMN_1213681 30.99248 0
ILMN_2735413 -0.9792017 0.7330827
ILMN_2735415 -0.8585804 0.7142857
ILMN_2891688 92.34521 0
ILMN_2637698 272.2156 0
ILMN_2674228 83.34485 0
ILMN_2601546 2.105357 0.1240602
ILMN_1230831 3.204028 0.06015038
ILMN_2848071 0.8151764 0.3170426

Total number of rows: 25697

Table truncated, full table size 760 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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