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Sample GSM954960 Query DataSets for GSM954960
Status Public on Jul 03, 2013
Title 30189375_spleen_Hmgn5_rep4
Sample type RNA
 
Source name spleen_Hmgn5
Organism Mus musculus
Characteristics strain: C57BL/6N
gender: male
genotype/variation: Hmgn5 mutant
age: 17 weeks
mouse id: 30189375
tissue: spleen
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 4
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
 
Submission date Jul 02, 2012
Last update date Jul 03, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
 
Platform ID GPL6885
Series (1)
GSE39062 Genome-wide expression profiling analysis of a Hmgn1, 3 and 5 mutant mouse model

Data table header descriptions
ID_REF
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 474.291 0
ILMN_2721178 77.62995 0
ILMN_3033922 45.04139 0
ILMN_3092673 630.0663 0
ILMN_2816356 -1.137285 0.783208
ILMN_2808939 111.0637 0
ILMN_2634564 35.54359 0
ILMN_2737647 0.5834252 0.3721805
ILMN_2734484 13.93058 0.002506266
ILMN_2952292 15.86224 0.002506266
ILMN_2699078 0.2602911 0.4548872
ILMN_1213681 26.6253 0
ILMN_2735413 0.8295413 0.3170426
ILMN_2735415 2.56243 0.1065163
ILMN_2891688 90.83417 0
ILMN_2637698 245.4577 0
ILMN_2674228 88.26113 0
ILMN_2601546 4.124787 0.04511278
ILMN_1230831 2.208763 0.1328321
ILMN_2848071 0.7974932 0.3283208

Total number of rows: 25697

Table truncated, full table size 762 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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