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Sample GSM954962 Query DataSets for GSM954962
Status Public on Jul 03, 2013
Title 30189377_thymus_wt_rep2
Sample type RNA
 
Source name thymus_wt
Organism Mus musculus
Characteristics strain: C57BL/6N
gender: male
genotype/variation: wild type
age: 17 weeks
mouse id: 30189377
tissue: thymus
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 2
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
 
Submission date Jul 02, 2012
Last update date Jul 03, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
 
Platform ID GPL6885
Series (1)
GSE39062 Genome-wide expression profiling analysis of a Hmgn1, 3 and 5 mutant mouse model

Data table header descriptions
ID_REF
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1786.457 0
ILMN_2721178 432.9011 0
ILMN_3033922 230.4755 0
ILMN_3092673 1171.758 0
ILMN_2816356 12.57709 0.01002506
ILMN_2808939 197.9291 0
ILMN_2634564 145.4506 0
ILMN_2737647 10.09089 0.02380952
ILMN_2734484 141.3424 0
ILMN_2952292 34.61993 0
ILMN_2699078 0.5472774 0.4799499
ILMN_1213681 156.224 0
ILMN_2735413 1.827842 0.3746867
ILMN_2735415 1.640632 0.3809524
ILMN_2891688 137.9854 0
ILMN_2637698 786.7244 0
ILMN_2674228 175.9412 0
ILMN_2601546 1.649817 0.3809524
ILMN_1230831 1.536647 0.3872181
ILMN_2848071 -0.1579205 0.5526316

Total number of rows: 25697

Table truncated, full table size 735 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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