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Sample GSM954963 Query DataSets for GSM954963
Status Public on Jul 03, 2013
Title 30193974_thymus_wt_rep3
Sample type RNA
Source name thymus_wt
Organism Mus musculus
Characteristics strain: C57BL/6N
gender: male
genotype/variation: wild type
age: 17 weeks
mouse id: 30193974
tissue: thymus
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 3
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
Submission date Jul 02, 2012
Last update date Jul 03, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE39062 Genome-wide expression profiling analysis of a Hmgn1, 3 and 5 mutant mouse model

Data table header descriptions
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1877.379 0
ILMN_2721178 393.6936 0
ILMN_3033922 192.3753 0
ILMN_3092673 962.7623 0
ILMN_2816356 6.655725 0.08897243
ILMN_2808939 229.3222 0
ILMN_2634564 132.7106 0
ILMN_2737647 0.7023639 0.5175439
ILMN_2734484 90.18588 0
ILMN_2952292 43.98695 0
ILMN_2699078 6.27505 0.0952381
ILMN_1213681 116.5336 0
ILMN_2735413 0.7456338 0.5175439
ILMN_2735415 5.361483 0.1353384
ILMN_2891688 173.265 0
ILMN_2637698 1013.353 0
ILMN_2674228 184.7125 0
ILMN_2601546 3.574578 0.2305764
ILMN_1230831 9.702446 0.03007519
ILMN_2848071 9.188379 0.03634085

Total number of rows: 25697

Table truncated, full table size 733 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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