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Sample GSM954964 Query DataSets for GSM954964
Status Public on Jul 03, 2013
Title 30189373_thymus_wt_rep4
Sample type RNA
 
Source name thymus_wt
Organism Mus musculus
Characteristics strain: C57BL/6N
gender: male
genotype/variation: wild type
age: 17 weeks
mouse id: 30189373
tissue: thymus
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 4
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
 
Submission date Jul 02, 2012
Last update date Jul 03, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
 
Platform ID GPL6885
Series (1)
GSE39062 Genome-wide expression profiling analysis of a Hmgn1, 3 and 5 mutant mouse model

Data table header descriptions
ID_REF
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1918.878 0
ILMN_2721178 186.7247 0
ILMN_3033922 131.157 0
ILMN_3092673 1087.933 0
ILMN_2816356 13.96645 0.01879699
ILMN_2808939 280.3256 0
ILMN_2634564 130.3471 0
ILMN_2737647 0.9060267 0.5
ILMN_2734484 160.0741 0
ILMN_2952292 60.76941 0
ILMN_2699078 1.638081 0.4423559
ILMN_1213681 108.9349 0
ILMN_2735413 1.807038 0.4335839
ILMN_2735415 0.9220242 0.4987469
ILMN_2891688 177.3114 0
ILMN_2637698 1132.34 0
ILMN_2674228 134.2021 0
ILMN_2601546 7.027246 0.1052632
ILMN_1230831 0.1496793 0.5689223
ILMN_2848071 7.528714 0.09649123

Total number of rows: 25697

Table truncated, full table size 735 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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