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Sample GSM954966 Query DataSets for GSM954966
Status Public on Jul 03, 2013
Title 30189371_thymus_Hmgn5_rep2
Sample type RNA
 
Source name thymus_Hmgn5
Organism Mus musculus
Characteristics strain: C57BL/6N
gender: male
genotype/variation: Hmgn5 mutant
age: 17 weeks
mouse id: 30189371
tissue: thymus
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 2
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
 
Submission date Jul 02, 2012
Last update date Jul 03, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
 
Platform ID GPL6885
Series (1)
GSE39062 Genome-wide expression profiling analysis of a Hmgn1, 3 and 5 mutant mouse model

Data table header descriptions
ID_REF
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1881.694 0
ILMN_2721178 293.2215 0
ILMN_3033922 172.2259 0
ILMN_3092673 912.3472 0
ILMN_2816356 6.811001 0.0839599
ILMN_2808939 244.6797 0
ILMN_2634564 173.6207 0
ILMN_2737647 6.77513 0.0839599
ILMN_2734484 135.0989 0
ILMN_2952292 54.4361 0
ILMN_2699078 -0.4779887 0.5952381
ILMN_1213681 105.2666 0
ILMN_2735413 -2.437497 0.7719298
ILMN_2735415 -4.032351 0.8609022
ILMN_2891688 157.5311 0
ILMN_2637698 1031.335 0
ILMN_2674228 198.1333 0
ILMN_2601546 1.746586 0.4035088
ILMN_1230831 4.808156 0.1629073
ILMN_2848071 3.057016 0.2869674

Total number of rows: 25697

Table truncated, full table size 740 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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