GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM954967 Query DataSets for GSM954967
Status Public on Jul 03, 2013
Title 30189376_thymus_Hmgn5_rep3
Sample type RNA
Source name thymus_Hmgn5
Organism Mus musculus
Characteristics strain: C57BL/6N
gender: male
genotype/variation: Hmgn5 mutant
age: 17 weeks
mouse id: 30189376
tissue: thymus
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 3
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
Submission date Jul 02, 2012
Last update date Jul 03, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE39062 Genome-wide expression profiling analysis of a Hmgn1, 3 and 5 mutant mouse model

Data table header descriptions
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1932.572 0
ILMN_2721178 315.6508 0
ILMN_3033922 171.6599 0
ILMN_3092673 1136.095 0
ILMN_2816356 1.508073 0.406015
ILMN_2808939 236.3225 0
ILMN_2634564 151.5148 0
ILMN_2737647 2.671799 0.3107769
ILMN_2734484 142.5796 0
ILMN_2952292 47.84649 0
ILMN_2699078 -8.301185 0.952381
ILMN_1213681 92.97831 0
ILMN_2735413 -0.0943647 0.6002506
ILMN_2735415 -1.3475 0.6829574
ILMN_2891688 182.8282 0
ILMN_2637698 994.4305 0
ILMN_2674228 165.5071 0
ILMN_2601546 6.594683 0.0839599
ILMN_1230831 9.400349 0.03383459
ILMN_2848071 3.516915 0.2380952

Total number of rows: 25697

Table truncated, full table size 732 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap