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Sample GSM958306 Query DataSets for GSM958306
Status Public on Jan 29, 2013
Title Wild Type Mice fed Low fat diet 2
Sample type RNA
 
Source name Liver
Organism Mus musculus
Characteristics genotype: Wild Type
treatment: Low fat diet
gender: male
tissue: liver
Extracted molecule total RNA
Extraction protocol total RNA was extracted using Trizol Protocol.
Label biotin
Label protocol Affymetrix standard methods were applied using the high throughput protocal for PM arrays
 
Hybridization protocol Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0. GeneChips were washed and stained using Standard protocol.
Scan protocol Affymetrix High-throughtput scanner standard protocol
Description Wild Type Mice fed Low fat diet
Data processing Data was normalized by a robust multi-chip analysis (RMA).
 
Submission date Jul 10, 2012
Last update date Jan 29, 2013
Contact name Manoj Bhasin
Phone 6176670009
Organization name Beth Israel Deaconess Medical Center
Street address 330 Brookline Avenue RN 380E
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL11180
Series (1)
GSE39220 PML regulates PPAR signaling and fatty acid oxidation in breast cancer

Data table header descriptions
ID_REF
VALUE log2 RMA

Data table
ID_REF VALUE
AFFX-BioB-5_at 5.95409
AFFX-BioB-M_at 7.51782
AFFX-BioB-3_at 7.27796
AFFX-BioC-5_at 8.36455
AFFX-BioC-3_at 8.70478
AFFX-BioDn-5_at 8.9865
AFFX-BioDn-3_at 10.699
AFFX-CreX-5_at 11.9778
AFFX-CreX-3_at 12.4642
AFFX-DapX-5_at 8.32469
AFFX-DapX-M_at 8.53573
AFFX-DapX-3_at 9.08904
AFFX-LysX-5_at 3.91165
AFFX-LysX-M_at 5.03783
AFFX-LysX-3_at 6.27651
AFFX-PheX-5_at 4.81777
AFFX-PheX-M_at 5.92851
AFFX-PheX-3_at 6.05529
AFFX-ThrX-5_at 6.30786
AFFX-ThrX-M_at 6.27511

Total number of rows: 45141

Table truncated, full table size 983 Kbytes.




Supplementary file Size Download File type/resource
GSM958306_Ar_2.CEL.gz 2.1 Mb (ftp)(http) CEL
GSM958306_Ar_2.rma.chp.gz 306.9 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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