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Sample GSM958312 Query DataSets for GSM958312
Status Public on Jan 29, 2013
Title Wild Type Mice fed high fat diet 2
Sample type RNA
 
Source name Liver
Organism Mus musculus
Characteristics genotype: Wild Type
treatment: high fat diet
gender: male
tissue: liver
Extracted molecule total RNA
Extraction protocol total RNA was extracted using Trizol Protocol.
Label biotin
Label protocol Affymetrix standard methods were applied using the high throughput protocal for PM arrays
 
Hybridization protocol Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0. GeneChips were washed and stained using Standard protocol.
Scan protocol Affymetrix High-throughtput scanner standard protocol
Description Wild Type Mice fed high fat diet
Data processing Data was normalized by a robust multi-chip analysis (RMA).
 
Submission date Jul 10, 2012
Last update date Jan 29, 2013
Contact name Manoj Bhasin
Phone 6176670009
Organization name Beth Israel Deaconess Medical Center
Street address 330 Brookline Avenue RN 380E
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL11180
Series (1)
GSE39220 PML regulates PPAR signaling and fatty acid oxidation in breast cancer

Data table header descriptions
ID_REF
VALUE log2 RMA

Data table
ID_REF VALUE
AFFX-BioB-5_at 6.1337
AFFX-BioB-M_at 7.66894
AFFX-BioB-3_at 7.46924
AFFX-BioC-5_at 8.50787
AFFX-BioC-3_at 8.72529
AFFX-BioDn-5_at 9.01811
AFFX-BioDn-3_at 10.789
AFFX-CreX-5_at 12.0174
AFFX-CreX-3_at 12.5032
AFFX-DapX-5_at 8.17729
AFFX-DapX-M_at 8.5687
AFFX-DapX-3_at 9.12726
AFFX-LysX-5_at 3.65561
AFFX-LysX-M_at 4.85806
AFFX-LysX-3_at 6.41137
AFFX-PheX-5_at 4.64002
AFFX-PheX-M_at 5.98241
AFFX-PheX-3_at 6.33395
AFFX-ThrX-5_at 6.23502
AFFX-ThrX-M_at 6.31968

Total number of rows: 45141

Table truncated, full table size 983 Kbytes.




Supplementary file Size Download File type/resource
GSM958312_Ar_8.CEL.gz 2.1 Mb (ftp)(http) CEL
GSM958312_Ar_8.rma.chp.gz 306.9 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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